PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00650g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 703aa    MW: 77070 Da    PI: 6.6873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00650g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07281301526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Peaxi162Scf00650g00002.1 281 PCPEFRK-GACRRGDMCEYAHG 301
                               8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.32E-1559139IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.9959134IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0165989IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1759141IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-1059128IPR020683Ankyrin repeat-containing domain
CDDcd002043.50E-1459141No hitNo description
PRINTSPR014154.8E-56075IPR002110Ankyrin repeat
SMARTSM002483.0E-494126IPR002110Ankyrin repeat
PROSITE profilePS5008812.31594129IPR002110Ankyrin repeat
PRINTSPR014154.8E-5113127IPR002110Ankyrin repeat
SMARTSM003569.5E-6276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981281303IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4281301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035639311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MNSNHLSVET EDTFASLLEL AANNDAVAFE RWIEHDLSSV HEVGLWYGRQ KGSRQMVLEH  60
RTPLMVAATY GSIDVLKLIL SLPEVDVNQS CGRDKSTALH CAASGGSLNA VDAVKLLIEA  120
GADPNSEDAN GHRPWDVIIA SPKFHSTKSS LENLLKIDTN GECSLRVSTA TSNSNSPPLS  180
PSPPGNRSSS SASDSTSSPR SAKSSDLPVS CTSEKKEYPI DPSLPDIKNS IYSTDEFRMF  240
SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TKCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNTSAANA  360
MEFAAAMGFI PGSPSSVPVM SPSPFTPPMS PSANGISNMG WPQPNVPALH LPGSNLQSSR  420
LRSSLNARDI HSEDLNMFPD FDVQQQQFLN EFSCLSQSSM NANSLNRLAH PKTLTPSNLD  480
DLFSTESSSP RYSDQALAQA VFSPTHKSAV FNQFQQQQQS MLSPINTNFS PKNVDNHLLQ  540
GSFGVPSPGR MSPRGMEPIS PMSSRMSMLA QREKQQQFRS LSSRDLGSNA SAVIGSPADT  600
WSQWGSSTGK ADWAVNIEEF GKLKRSSSFE LANNGEEPDL SWVQSLVKES PQEMKDKAAS  660
RMLGLAGSGA DISEGSTSNS KTEQLDQLSA WMEQMKLDKL MAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618285.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_009618286.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_016464875.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016464876.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016464877.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM1CJN80.0M1CJN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000689260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain